Preheat oven to 400°F.
Process the nuts in a food processor to chop them up. Pour the honey and vanilla into a medium bowl and stir with a wooden spoon until the vanilla is completely drawn into the honey. Add the nuts and mix with the wooden spoon until they are completely coated with the honey. Grease a baking sheet, then lay parchment paper over it and cut to fit.
Warm the clarified butter in a small pot.
Open the defrosted phyllo-dough package and spread the dough out on the counter. Remember to work fast as dough dries quickly, making it less responsive. You will eventually create 2 separate stacks of phyllo dough placed on top of each other on the baking sheet. The first stack consists of 6 sheets of phyllo dough, which you will cut in half. The second stack consists of 3 sheets, which you will fold in half.
Prepare the first stack (6 sheets), keeping the remainder covered with a large piece of foil. Quickly brush the clarified butter on each sheet with a pastry brush, one at a time, layering one on top of the other. Using clean kitchen scissors, cut the stack in half and lay 1/2 on the baking sheet. Spread 1/2 of the honey-and-nut mixture evenly on that half. Lay the other half on top of the honey-and-nut mixture. Spread the remaining 1/2 of the honey-and-nut mixture on the top. Next, coat the second stack of phyllo dough (3 sheets) with the clarified butter and fold all the sheets in half. Lay them on top of the earlier stack that's already on the baking sheet.
Place the filled sheet in the oven and bake until the top is golden and the honey is bubbling, about 20 minutes. Remove the baking sheet from the oven and let cool. Making 6 even slices, cut the entire pastry horizontally first, then make 6 even slices at a 45-degree angle from top to bottom to create 36 triangular pieces.
Melt 1/2 cup chocolate chips in a stainless-steel double boiler. Stir until the chocolate is smooth. Remove from the heat. Working quickly, dip a fork into the chocolate and drizzle it horizontally across the cooling baklava.
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